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Page history last edited by SKotelnikova 12 years, 3 months ago

Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25(17), 3389-3402.

Alsina, M., and a. R. Blanch. 1994. A set of keys for biochemical identification of environmental Vibrio species. The Journal of applied bacteriology 76:79-85.

Baumann, P., L. Baumann, and M. Mandel. 1971. Taxonomy of marine bacteria: the genus Beneckea. Journal of bacteriology 107:268-94.BMSL (2008). Protocols: Polyacrylamide gel staining. Retrieved September 18th 2010 from http://www.bmsl.uwo.ca/polyacrylamide_gel_staining.html

Beaz-Hidalgo R, Doce A, Pascual J, Toranzo AE, Romalde JL. Vibrio gallaecicus sp. nov. isolated from cultured clams in north-western Spain. Syst Appl Microbiol. 2009 Apr;32(2):111-7. Epub 2009 Jan 30.

Beaz-Hidalgo R, Diéguez AL, Cleenwerck I, Balboa S, Doce A, de Vos P, Romalde JL. Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams. Syst Appl Microbiol. 2010 Oct;33(6):311-5. Epub 2010 Aug 17.

Bej, A. K., Patterson, D. P., Brasher, C. W., Vickery, M. C. L., Jones, D. D., & Kaysner, C. A. (1999). Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplification of tl, tdh and trh. Journal of Microbiological Methods, 36, 215-225.

Brenner, D. J., Krieg, N. R., Staley, J. T., Garrity, G. M., Gillis, M., Vandamme, P., et al. (2005). Polyphasic Taxonomy. In Bergey’s Manual® of Systematic Bacteriology (pp. 43-48): Springer US.

Caputo, N D., and Kotelnikova, S. Novel antimicrobial producing microorganisms from Tropical marine environments. International Union of Microbiological Societies 2005. Book of abstracts XI International congress of bacteriology and Applied Microbiology. San Francisco, California, USA July 23-28, 2005, B-835, p.37.

Caputo, N. D., Bruno, C. K., Martine, E. L. and S.V.Kotelnikova. Vibrio croceus sp. nov., a yellow, halophilic marine bacterium that produces active secondary metabolites isolated from the biofilms of sea rocks in Grenada. International Journal of Evolutionary and Systematic Microbiology. Pp. 1-31. Submission manuscript id: ijs/2008/008441.

Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam, S. A., McGarrell, D. M., et al. (2005). The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res, 33(Database issue), D294-296.

Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, Q., Kulam, S. A., et al. (2003). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res, 31(1), 442-443.

Craine, H., G. Burgess and S. Kotelnikova. Characterization of marine sponge-associated bacteria and cytotoxic activity of sponge extracts towards human cancer cells. WINDREF Research Institute Annual Report, 2007, pp. 43-46.

Craine, H.L.,  Kotelnikova, S.V., Yong, Y., Crawford, Clark J. and J. Grant Burgess. Characterization of marine sponge-associated bacteria and cytotoxic activity of sponge extracts towards human cancer cells. J. Natural Products, to be submitted in 2010, pp.1-17.

Davis, S., C. Bruno, R. Signh, and S. Kotelnikova. (2004). Gram-negative bacteria isolated from coastal recreational waters in Grenada island (61W, 10N), West Indies ISME 10, Cancun, Mexico, www.kenes.com/isme.

DeSantis, T. Z., Dubosarskiy, I., Murray, S. R., & Andersen, G. L. (2003). Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA. Bioinformatics, 19(12), 1461-1468.

DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol, 72(7), 5069-5072.

Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K., Stakebrandt, E. (2006). The Prokaryotes (3rd Ed.): A handbook on the biology of bacteria: Proteobacteria: Gamma subclass (Vol.6), pp. 495-562. Singapore: Springer.

Edgar, R. C. (2004). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.

EMBL-EBI. (2009). MUSCLE: MUltiple Sequence Comparison by Log-Expectation.   Retrieved 19th May, 2009, from http://www.ebi.ac.uk/Tools/muscle/DSMZ (2010). Bacterial nomenclature up-to-date. Retrieved October 9th, 2010 from http://www.dsmz.de/microorganisms/bacterial_nomenclature_info.php?genus=Vibrio&show_all_details=1

Euzéby, J.P. (1997). List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. Int. J. Syst. Bacteriol., 1997, 47, 590-592. Retrieved September 9th, 2010 from  http://www.bacterio.net

Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39(4), 783-791.

Fuenzalida, L., Hernández, J.T., Rioseco, L.M., Romero, J., & Espejo, R.T. (2006). Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhea in southern Chile. Environmental Microbiology, 8(4), pp.675-683.

Garrity, G., Lilburn, T., Cole, J., Harrison, S., Euzeby, J., & Tindall, B. (2007). Part 5 – The Bacteria: Phylum Proteobacteria, Class Gammaproteobacteria. The Taxonomic Outline of Bacteria and Archaea, 7(7). Retrieved 2010-09-09, from http://www.taxonomicoutline.org/idex.php/toba/article/view/181/214

Gauger, E.J.,  Gómez-Chiarri (2002). 16S ribosomal DNA sequencing confirms the synonymy of Vibrio harveyi and V. carchariae. Diseases of Aquatic Organisms, 52, 39-46.

Gomez-Gil, B., Soto-Rodriguez, S., Garcia-Gasca, A., Roque, A., Vazquez-Juarez, R., Thompson, F.L., & Swings, J. (2004). Molecular identification of Vibrio harveyi-related isolates associated with diseases aquatic organisms. Microbiology, 150, 1769-1777.

Guilliatt, A.M. (2002). Agarose and polyacrylamide gel electrophoresis. Methods in Molecular Biology: 187, pp. 1-12

Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.

Jukes, T. H., & Cantor, C. R. (1969). Evolution of Protein Molecules. In H. N. Munro (Ed.), Mammalian Protein Metabolism (pp. 21-132). New York: Academy Press.

Johnson, J., Weir, J., and C. Bruno. (2007). Physiological characterization of novel marine bacterial species isolated off Grenada. WINDREF Report, Grenada, West Indies, pp. 37-39.

Jamiesson, L.J. Genetic identification of bacteria isolated from sponge Halichondria panicea and characteriazation of bacteria isolated from the tropical sponges Aplysina fulva, Xestospongia muta, and Ircinia strobilina.  Msc Thesis supervised by Burgess, G and S. Kotelnikova, University of Newcastle, 2008, pp.1-135.

Ki, J.-S., R. Zhang, W. Zhang, Y.-L. Huang, and P.-Y. Qian. 2009. Analysis of RNA Polymerase Beta Subunit (<i>rpoB</i>) Gene Sequences for the Discriminative Power of Marine <i>Vibrio</i> Species. Microbial Ecology 58:679-691.

Kalendar, R., Lee, D., & Schulman, A. H. (2009). FastPCR Software for PCR Primer and Probe Design and Repeat Search. Genes, Genomes and Genomics, 3(1).

Kotelnikova S., Caputo N., Bruno, C. Bhimarasetty. B., Varicheva, Y. E., Birungi, J., and Martine, E.L. New Species isolated from the bottom of the sea. Grenada, West Indies. 11-th International Symposium on Microbial Ecology - ISME -11. The hidden powers - microbial communities in action. Vienna 20-25, 2006. p. 268.

Kotelnikova, S., Caputo, N., Bruno, C., and E. Martin. (2006). Unique bactera from the bottom of the sea in Grenada: Friends or enemies? WINDREF Report., Grenada, West Indies, pp. 19-21. www.kenes.com/isme/program/search.asp

Kotelnikova, S. Major Area of Research in Marine Biotechnology WINDREF Research Institute Annual Report, 2008, pp. 27-34.

Kotelnikova, S. Swedish Research Council Funds SGU Research and Development.  WINDREF Research Institute Annual Report, 2008, pp. 48-51.

Kotelnikova, S. UV-resistant Marine  Microorganisms as Producers of Anti-UVB Compounds WINDREF Research Institute Annual Report, 2008, pp. 44-46.

Kotelnikova, S.,  Laura Jamieson and Grant Burgess. Marine Bacteria associated with Sponges: Recent Developments in Marine Biotechnology at SGU. WINDREF Research Institute Annual Report, 2008, pp. 34-39.

Kotelnikova, S. SGU Research in Microbiology Presented at a Regional Meeting Compounds WINDREF Research Institute Annual Report, 2008, pp. 1-3.

Kotelnikova S. Research at SGU Gains International Recognition - Part.1. In SGU Gazette, November, 23, 2007, issue 102.

Kotelnikova, S.V., and C.K. Bruno Novel marine bacteria and their antagonistic properties against medically relevant biofilms. Abstract published by KENES for FEMS 2009 Congress in Gothenburg, Sweden, June 28-July 2, 2009, pp. 104.

Kotelnikova, S.V., Ryan MacDonald, and E. L. Martine. Unusual resistance of marine Vibrio from Grenada to solar UV radiation. Caribbean Academy of Sciences 2008 Conference proceedings book, October 11-13, 2008, Grenada, West Indies, pp.21-31.

Kotelnikova, S.V., Caputo , N. B., Bruno, C. K., Weir, J.,,Johnson, J., Martin E.L.,  and K. Pedersen. Vibrio salinivivax sp. nov., sp. a halophilic UV resistant marine bacterium isolated from biofilm on the bottom of the sea in Grenada. International Journal of Evolutionary and Systematic Microbiology. Pp.1-51. Submission; manuscript id: ijs/2008/007385

Miyamoto, Y., T. Kato, Y. Obara, S. Akiyama, K. Takizawa, and S. Yamai. 1969. In Vitro Hemolytic Characteristic of Vibrio parahaemolyticus: Its Close Correlation with Human Pathogenicity. J. Bacteriol. 100:1147-1149.

Kotelnikova , S.V. , Caputo, N.K.,  Bruno, C.K,  Bhimarasetty, B., Varicheva, Y., Birundi, J. &  Martin, E.L. (2006). New bacterial species isolated from the bottom of the sea, Grenada, West Indies. International Society for Microbial Ecology.

Lopez-Garcia, P., Gaill, F., & Moreira, D. (2002). Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ Microbiol, 4(4), 204-215.

Ministry of Agriculture, Forestry and Fisheries (2008). Annual agriculture review, Grenada W.I. Retrieved September 19, 2010 from http://www.gov.gd/egov/docs/reports/MOA_annual%20review_2008.pdf

Mishra, P., Samanta, M., Mohanty, S., & Maiti, N.K. (2010). Characterization of Vibrio species isolated from freshwater fishes by ribotyping. Indian Journal of Microbiology, 50 (1), pp. 101-103.

Naraine, R and Kotelnikova S. Horizontal gene transfer conributed to the evolution of marine Vibrio in Grenada. WAR, 2011

Nilsson, W.B., Paranjype, R.N., DePaola, A., & Strom, M.S. (2003). Sequence polymorphism of the 16S rRNA Gene of Vibrio vulnificus is a possible indicator of strain virulence. Journal of Clinical Microbiology, 41 (1), pp. 442-446.

Straker, L. (2010, September 10). Fisheries Ministry investigating suspected fish kill. The Grenada Advocate- Friday September 10,2010. Adovate Publishers Inc: Fontabelle, St. Michael.

Pascual, J., M. C. Macián, D. R. Arahal, E. Garay, and M. J. Pujalte. 2010. Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. International Journal of Systematic and Evolutionary Microbiology 60:154-65.

Pascual, J., Macian, M. C., Arahal, D. R., Garay, E., & Pujalte, M. J. (2009). Multilocus sequence analysis of the central clade of the genus Vibrio by using 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol, ijs.0.010702-010700.

Saitou, N., & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol, 4(4), 406-425.

Stackebrandt, E., & Goebel, B. M. (1994). Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology. Int J Syst Bacteriol, 44(4), 846-849.

Tamura, K., Dudley, J., Nei, M., & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol, 24(8), 1596-1599.

Thompson, C., Vicente, A., Souza, R., Vasconcelos, A., Vesth, T., Alves, N., et al. (2009). Genomic taxonomy of vibrios. BMC Evolutionary Biology, 9(1), 258.

Thompson, C. C., Thompson, F. L., Vicente, A. C., & Swings, J. (2007). Phylogenetic analysis of vibrios and related species by means of atpA gene sequences. Int J Syst Evol Microbiol, 57(Pt 11), 2480-2484.

Thompson, C. C. Thompson, S. Naser, B. Hoste, K. Vandemeulebroecke, C. Munn, D. Bourne and J. Swings. Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated  with coral bleaching

Urakawa, H., Kita-tsukamoto, K., & Ohwada, K. (1997). 16S rDNA genotyping using PCR/RFLP (restriction fragment length polymorphism) analysis among the family Vibrionaceae. FEMS Microbiology Letters, (152), pp.125-132.

Yoon, Y., Im, K., Koh, Y., Kim, S., & Kim, J. (2003). Genotyping of six pathogenic Vibrio species based on RFLP of 16S rDNAs for rapid identification. The Journal of Microbiology, 41(4), pp.312-319.

Woese, C. R. (1987). Bacterial evolution. Microbiol Rev, 51(2), 221-271.

Zhang, Z., Schwartz, S., Wagner, L., & Miller, W. (2000). A greedy algorithm for aligning DNA sequences. J Comput Biol, 7(1-2), 203-214.

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